Package: moduleColor 1.8-4

moduleColor: Basic Module Functions

Methods for color labeling, calculation of eigengenes, merging of closely related modules.

Authors:Peter Langfelder <[email protected]> and Steve Horvath <[email protected]>

# Install 'moduleColor' in R:

install.packages('moduleColor', repos = c('https://plangfelder.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

Last updated 3 years agofrom:fc6c38598a. Checks:OK: 7. Indexed: yes.

Help page	Topics
Basic Module Functions	moduleColor-package moduleColor
Check structure and retrieve sizes of a group of datasets.	checkSets
Iterative garbage collection.	collectGarbage
Consensus dissimilarity of module eigengenes.	consensusMEDissimilarity
Put close eigenvectors next to each other in several sets.	consensusOrderMEs
Put single-set data into a form useful for multiset calculations.	fixDataStructure
Convert numerical labels to colors.	labels2colors
Merge close modules of gene expression data.	mergeCloseModules
Get the prefix used to label module eigengenes.	moduleColor.getMEprefix
Get the last revision date of the package.	moduleColor.revisionDate
Set the prefix used to label module eigengenes.	moduleColor.setMEprefix
Get the version number of the package.	moduleColor.version
Calculate module eigengenes.	moduleEigengenes
Fixed-height cut of a dendrogram.	moduleNumber
Calculate module eigengenes.	multiSetMEs
Transform numerical labels into normal order.	normalizeLabels
Put close eigenvectors next to each other	orderMEs
Plot color rows corresponding to modules	plotHclustColors
Removes the grey eigengene from a given collection of eigengenes.	removeGreyME
Colors this library uses for labeling modules.	standardColors