{ "_id": "6a50b94789c83ec243a300c0", "Package": "moduleColor", "Version": "1.8-4", "Date": "2022-04-08", "Title": "Basic Module Functions", "Author": "Peter Langfelder and Steve Horvath\n", "Maintainer": "Peter Langfelder ", "ZipData": "no", "License": "GPL (>= 2)", "Description": "Methods for color labeling, calculation of eigengenes,\nmerging of closely related modules.", "URL": "https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/BranchCutting/", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-10 09:17:20 UTC", "User": "root" }, "Repository": "https://plangfelder.r-universe.dev", "Date/Publication": "2022-04-09 15:02:29 UTC", "RemoteUrl": "https://github.com/cran/moduleColor", "RemoteRef": "HEAD", "RemoteSha": "fc6c38598a7d76e10a33c46255e94577213f5d3e", "_user": "plangfelder", "_type": "src", "_file": "moduleColor_1.8-4.tar.gz", "_fileid": "https://r2.ropensci.org/0f945276e1ddf027bf9d7ce62f72bac0008e22acf3ec083c6d75a039732f01c0", "_filesize": 186345, "_sha256": "0f945276e1ddf027bf9d7ce62f72bac0008e22acf3ec083c6d75a039732f01c0", "_expires": "2026-10-18T09:20:05.000Z", "_created": "2026-07-10T09:17:20.000Z", "_published": "2026-07-10T09:20:06.959Z", "_jobs": [ { "job": 86328577823, "time": 103, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8223403251" }, { "job": 86328577815, "time": 102, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8223407452" }, { "job": 86328577859, "time": 131, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8223413339" }, { "job": 86328577899, "time": 83, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8223395903" }, { "job": 86328075290, "time": 163, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8223362672" }, { "job": 86328577896, "time": 91, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8223399065" }, { "job": 86328577889, "time": 76, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8223393207" }, { "job": 86328577891, "time": 57, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8223385545" }, { "job": 86328577913, "time": 55, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8223385026" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/plangfelder/actions/runs/29082384926", "_status": "success", "_upstream": "https://github.com/cran/moduleColor", "_commit": { "id": "fc6c38598a7d76e10a33c46255e94577213f5d3e", "author": "Peter Langfelder ", "committer": "cran-robot ", "message": "version 1.8-4\n", "time": 1649516549 }, "_maintainer": { "name": "Peter Langfelder", "email": "peter.langfelder@gmail.com", "login": "plangfelder", "description": "", "uuid": 78670259 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.3.0", "role": "Depends" }, { "package": "stats", "role": "Depends" }, { "package": "impute", "role": "Depends" }, { "package": "grDevices", "role": "Depends" }, { "package": "dynamicTreeCut", "role": "Depends" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "plangfelder", "count": 7, "uuid": 78670259 } ], "_userbio": { "uuid": 78670259, "type": "user", "name": "plangfelder", "followers": 8 }, "_downloads": { "count": 563, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/moduleColor" }, "_searchresults": 20, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/moduleColor.html", "manual.pdf" ], "_realowner": "plangfelder", "_cranurl": false, "_releases": [ { "version": "1.05-2", "date": "2008-04-04" }, { "version": "1.05-3", "date": "2008-04-10" }, { "version": "1.06", "date": "2008-05-13" }, { "version": "1.08", "date": "2008-08-06" }, { "version": "1.08-1", "date": "2009-10-11" }, { "version": "1.08-3", "date": "2014-11-26" }, { "version": "1.8-4", "date": "2022-04-09" } ], "_exports": [ "checkSets", "collectGarbage", "consensusMEDissimilarity", "consensusOrderMEs", "fixDataStructure", "labels2colors", "mergeCloseModules", "moduleColor.getMEprefix", "moduleColor.revisionDate", "moduleColor.setMEprefix", "moduleColor.version", "moduleEigengenes", "moduleNumber", "multiSetMEs", "normalizeLabels", "orderMEs", "plotHclustColors", "removeGreyME", "standardColors" ], "_help": [ { "page": "moduleColor-package", "title": "Basic Module Functions", "topics": [ "moduleColor-package", "moduleColor" ] }, { "page": "checkSets", "title": "Check structure and retrieve sizes of a group of datasets.", "topics": [ "checkSets" ] }, { "page": "collectGarbage", "title": "Iterative garbage collection.", "topics": [ "collectGarbage" ] }, { "page": "consensusMEDissimilarity", "title": "Consensus dissimilarity of module eigengenes.", "topics": [ "consensusMEDissimilarity" ] }, { "page": "consensusOrderMEs", "title": "Put close eigenvectors next to each other in several sets.", "topics": [ "consensusOrderMEs" ] }, { "page": "fixDataStructure", "title": "Put single-set data into a form useful for multiset calculations.", "topics": [ "fixDataStructure" ] }, { "page": "labels2colors", "title": "Convert numerical labels to colors.", "topics": [ "labels2colors" ] }, { "page": "mergeCloseModules", "title": "Merge close modules of gene expression data.", "topics": [ "mergeCloseModules" ] }, { "page": "moduleColor.getMEprefix", "title": "Get the prefix used to label module eigengenes.", "topics": [ "moduleColor.getMEprefix" ] }, { "page": "moduleColor.revisionDate", "title": "Get the last revision date of the package.", "topics": [ "moduleColor.revisionDate" ] }, { "page": "moduleColor.setMEprefix", "title": "Set the prefix used to label module eigengenes.", "topics": [ "moduleColor.setMEprefix" ] }, { "page": "moduleColor.version", "title": "Get the version number of the package.", "topics": [ "moduleColor.version" ] }, { "page": "moduleEigengenes", "title": "Calculate module eigengenes.", "topics": [ "moduleEigengenes" ] }, { "page": "moduleNumber", "title": "Fixed-height cut of a dendrogram.", "topics": [ "moduleNumber" ] }, { "page": "multiSetMEs", "title": "Calculate module eigengenes.", "topics": [ "multiSetMEs" ] }, { "page": "normalizeLabels", "title": "Transform numerical labels into normal order.", "topics": [ "normalizeLabels" ] }, { "page": "orderMEs", "title": "Put close eigenvectors next to each other", "topics": [ "orderMEs" ] }, { "page": "plotHclustColors", "title": "Plot color rows corresponding to modules", "topics": [ "plotHclustColors" ] }, { "page": "removeGreyME", "title": "Removes the grey eigengene from a given collection of eigengenes.", "topics": [ "removeGreyME" ] }, { "page": "standardColors", "title": "Colors this library uses for labeling modules.", "topics": [ "standardColors" ] } ], "_rundeps": [ "dynamicTreeCut", "impute" ], "_score": 1.3010299956639813, "_indexed": true, "_nocasepkg": "modulecolor", "_universes": [ "plangfelder" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.8-4", "date": "2026-07-10T09:19:11.000Z", "distro": "resolute", "commit": "fc6c38598a7d76e10a33c46255e94577213f5d3e", "fileid": "https://r2.ropensci.org/b94b7bb85abbe055647dfc2052c5a14fa27a666dcc6202969195fbacaa77e803", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/plangfelder/actions/runs/29082384926" }, { "r": "4.6.1", "os": "linux", "version": "1.8-4", "date": "2026-07-10T09:19:22.000Z", "distro": "resolute", "commit": "fc6c38598a7d76e10a33c46255e94577213f5d3e", "fileid": "https://r2.ropensci.org/14999a5c55308b1d21867f62e07776c7e0e3040431d7dc66aa3d73d6b52c2deb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/plangfelder/actions/runs/29082384926" }, { "r": "4.5.3", "os": "mac", "version": "1.8-4", "date": "2026-07-10T09:19:33.000Z", "commit": "fc6c38598a7d76e10a33c46255e94577213f5d3e", "fileid": "https://r2.ropensci.org/08899f623cb637832a6cddd550e72cee6225b953b6b104227da123bbe11dacac", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/plangfelder/actions/runs/29082384926" }, { "r": "4.6.1", "os": "mac", "version": "1.8-4", "date": "2026-07-10T09:18:52.000Z", "commit": "fc6c38598a7d76e10a33c46255e94577213f5d3e", "fileid": "https://r2.ropensci.org/67e2398cca2f7e44e7ec6ecae27ed044246ecd31625a046bcec9ad7eaacc974b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/plangfelder/actions/runs/29082384926" }, { "r": "4.6.0", "os": "wasm", "version": "1.8-4", "date": "2026-07-10T09:19:09.000Z", "commit": "fc6c38598a7d76e10a33c46255e94577213f5d3e", "fileid": "https://r2.ropensci.org/d59debfdac907cf18bafc0afa2c795c541a90c77516a4fbd132f4a48a9ab726e", "status": "success", "buildurl": "https://github.com/r-universe/plangfelder/actions/runs/29082384926" }, { "r": "4.7.0", "os": "win", "version": "1.8-4", "date": "2026-07-10T09:18:39.000Z", "commit": "fc6c38598a7d76e10a33c46255e94577213f5d3e", "fileid": "https://r2.ropensci.org/82aff22bc226602d3953ad8db0df0c76df7088bbddf4a19abbf4d5c586b37022", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/plangfelder/actions/runs/29082384926" }, { "r": "4.5.3", "os": "win", "version": "1.8-4", "date": "2026-07-10T09:18:20.000Z", "commit": "fc6c38598a7d76e10a33c46255e94577213f5d3e", "fileid": "https://r2.ropensci.org/a80cdf550ae0954083fcc8c407543a1f46895c6eec05a923f2a77beb877f10e6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/plangfelder/actions/runs/29082384926" }, { "r": "4.6.1", "os": "win", "version": "1.8-4", "date": "2026-07-10T09:18:19.000Z", "commit": "fc6c38598a7d76e10a33c46255e94577213f5d3e", "fileid": "https://r2.ropensci.org/e6d9e8318429c3dc7ff24b0a4e096a89d64c1b633dbb0bebdbca03f9be7a4b77", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/plangfelder/actions/runs/29082384926" } ] }